CCDC11
Protein-coding gene in humans
Coiled-Coil Domain Containing 11, also known as CCDC11, is a protein, that is encoded by CCDC11 gene located at chromosome 18 in humans.
01Overview
The CCDC11 gene is located on chromosome 18q21.1 and is made of 39303 BP. The CCDC11 protein is made of 514 amino acids and has a mass of 61835 Da. Its aliases include coiled-coil domain containing protein 11, FLJ32743, OTTHUMP00000163503.
02Homology
CCDC has orthologs all the way back to betaproteobacteria which is a class of Proteobacteria. The following table represents a small selection of orthologs found using searches in BLAST and BLAT. This is by no means a comprehensive list; however, it shows the diversity of species that CCDC11 is found.
| Species | Organism Common Name | NCBI Accession | Length (AAs) | Sequence identity | Sequence similarity |
|---|---|---|---|---|---|
| Homo sapiens | Human | NP_659457 | 514 | 100% | 100% |
| Pan troglodytes | Chimpanzee | XP_523923.3 | 514 | 99% | 99% |
| Callithrix jacchus | Marmoset | XP_002757278.1 | 514 | 92% | 95% |
| Ailuropoda melanoleuca | Panda | XP_002939158.1 | 514 | 83% | 91% |
| Canis familiaris | Dog | XP_547689.3 | 514 | 82% | 91% |
| Bos taurus | Cow | XP_002697813.1 | 514 | 81% | 91% |
| Loxodonata africana | Elephant | XP_003406348.1 | 514 | 80% | 91% |
| Rattus norvegicus | Rat | XP_001053914.2 | 514 | 71% | 87% |
| Mus musculus | Mouse | NP_083224.2 | 514 | 70% | 87% |
| Ornithorhynchus anatinus | Platypus | XP_001509001.2 | 465 | 49% | 72% |
| Monodelphis domestica | Opossum | XP_001372850.2 | 507 | 47% | 70% |
| Xenopus tropicalis | Frog | NP_001120281.1 | 516 | 39% | 65% |
| Anolis carolinensis | Lizard | XP_003227331.1 | 514 | 37% | 62% |
| Nematostella vectensis | Sea anemone | XP_001628275.1 | 440 | 36% | 58% |
| Branchiostoma floridae | Lancelet | XP_002609924.1 | 528 | 35% | 61% |
| Trichoplax adhaerens | Trichoplax | XP_002111027.1 | 514 | 33% | 60% |
| Danio rerio | Zebra fish | NP_001038595.2 | 519 | 32% | 58% |
| Amphimedon queenslandica | Sponge | XP_003389146.1 | 513 | 31% | 60% |
03Gene neighborhood
The below image from NCBI shows the gene neighborhood of CCDC11 on chromosome 18. CCDC11 has methyl-CPG binding domain protein 1, MBD1, upstream and myosin VB3, MYO5B, downstream. All CCDC11, MBD1 and MYO5B are oriented negatively. Note the close proximity between MBD1 and CCDC11.
04Predicted Post-Translational Modification
Tools on the ExPASy Proteomics site predict the following post-translational modifications:
| Tool | Predicted Modification | Homo sapiens | Mus musculus | Bos taurus |
|---|---|---|---|---|
| YinOYang | O-β-GlcNAc | T239, S510 | T239 | T239, S509, T510 |
| NetPhos | phosphorylation | T8, T17, S43, S53, S56, S57, Y112, T134, S170, S240, S425, S461 | T17, S43, S53, S56, S107, Y112, S114, S170, T284, S287, S492 | T17, S56, T64, S107, T112, T122, T325, S442, S482, S507 |
One tool on the ExPASy, iPSORT, showed no signal peptide;however, it indicated CCDC11 to be mitochondrial. Another tool on the ExPASy, SOSUI, indicated the protein to be a soluble protein.
Sources and credits
This article is adapted from the Wikipedia article “CCDC11”, written by its contributors and licensed under CC BY-SA 4.0. Fathomly has changed the layout, removed citation markers, navigation and maintenance notices, and adjusted punctuation. This adapted version is shared under the same license. For references, see the original article.
Images, from Wikimedia Commons:
- Gene neighborhood of CCDC11.jpg by NCBI, Public domain
Fathomly is not affiliated with or endorsed by the Wikimedia Foundation. Spotted a problem? Tell us.